Projects
Major software outputs, packages, and modelling tools.
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METIS
Python tools for training and evaluating neural surrogates of simulator trajectories.
hrpup
Reproducible research compendium for pfhrp2/3 deletion risk mapping.
vrcmort
R tools for estimating mortality when registration completeness changes.
hrp2malaRia
Individual based malaria transmission model for the study of P. falciparum pfhrp2 gene deletions
icer
Infection composition estimation in R
McCOILR
Rcpp implementation of THEREALMcCOIL.
nimue
Vaccination model of SARS-CoV-2 transmission.
outbreakteachR
Paper outbreak teaching practical
rdhs
An R package to interact with DHS surveys
squire
Compartmental model of SARS-CoV-2 transmission.
magenta
An individual-based simulation model of malaria epidemiology and parasite genetics