Projects

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hmmIBDr

Rcpp implementation of hmmIBD.

hrp2malaRia

Individual based malaria transmission model for the study of P. falciparum pfhrp2 gene deletions

icer

Infection composition estimation in R

McCOILR

Rcpp implementation of THEREALMcCOIL.

nimue

Vaccination model of SARS-CoV-2 transmission.

outbreakteachR

Paper outbreak teaching practical

rdhs

An R package to interact with DHS surveys

squire

Compartmental model of SARS-CoV-2 transmission.

magenta

An individual-based simulation model of malaria epidemiology and parasite genetics